Suite2p ImporterΒΆ

You can load Suite2p output files to import ROIs into the current work environment. This places the Suite2p-derived ROIs onto the image that is currently open.

../../../_images/suite2p_importer.png

You can also use this module through the viewer console, or in the Script Editor instead of clicking buttons.

Example

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# get the module, hide the GUI
s2p_importer = get_module('suite2p_importer', hide=True)

# set the path to the dir containing the suite2p output files
s2p_importer.data.set_dir('/path/to/dir')

# set the amount of neuropil contamination to subtract
s2p_importer.data.Fneu_sub = 0.7

# import the suite2p data into the current work environment
s2p_importer.import_rois()

# clear the data from the importer before importing another directory
# this doesn't do anything to the viewer work environment, just clears the importer data
s2p_importer.data.clear()