Source code for mesmerize.viewer.core.data_types

#!/usr/bin/env python3:
# -*- coding: utf-8 -*-
Created on Tue Dec 22 19:01:21 2017

@author: kushal

Chatzigeorgiou Group
Sars International Centre for Marine Molecular Biology

GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007

Just a clean simple & independent image data class which is the core of the work
envrionment in Mesmerize Viewer.

seq : 3D array (2D + time) of the image sequence
meta : meta data dictionary
Map : Stimulus map. Contains the definitions of the stimuli & the time that they
occured for the animal that was exposed to in this particular image sequence

import numpy as np
#from PyQt5 import QtGui
#import pyqtgraphCore.functions as fn
#import csv
#from common import configuration
#from .misc_funcs import fix_fp_errors

[docs]class ImgData: """Object that stores the image sequence and meta data from the imaging source"""
[docs] def __init__(self, seq: np.ndarray = None, meta: dict = None): """ :param seq: Image sequence as a numpy array, shape is [x, y, t] :param meta: Meta data dict from the imaging source. """ self.seq = seq #: image sequence, shape is [x, y, t] if meta is None: meta = {'origin': 'unknown', 'fps': 0, 'date': 'unknown', 'orig_meta': None } self.meta = meta.copy() #: Meta data dict from the imaging source